Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim28Q62318 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim28Q62318 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim28Q62318 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim28Q62318 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim28Q62318 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm17230-201ENSMUST00000171194 3942 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm37058-201ENSMUST00000193393 1644 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Ccl19-ps1-201ENSMUST00000119621 327 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm11979-201ENSMUST00000119629 743 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm12712-201ENSMUST00000120676 801 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm12745-201ENSMUST00000121767 214 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm5257-201ENSMUST00000121823 790 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim28Q62318 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm8451-201ENSMUST00000170338 447 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm25677-201ENSMUST00000174983 72 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm16755-201ENSMUST00000180595 933 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm7255-201ENSMUST00000187371 908 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm37852-201ENSMUST00000193027 350 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Gm7047-201ENSMUST00000196224 1063 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Tbc1d24-211ENSMUST00000201583 893 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC14.46□□□□□ -0.09
Trim28Q62318 AC154461.3-201ENSMUST00000224831 573 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Trim28Q62318 Gm5453-201ENSMUST00000080866 447 ntBASIC14.46□□□□□ -0.09
Trim28Q62318 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Trim28Q62318 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim28Q62318 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Trim28Q62318 Enpp7-201ENSMUST00000092373 1370 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.1
Trim28Q62318 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC14.46□□□□□ -0.1
Trim28Q62318 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim28Q62318 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Trim28Q62318 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim28Q62318 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm37969-201ENSMUST00000195777 3409 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm11957-201ENSMUST00000118304 779 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm15519-201ENSMUST00000120088 1566 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm9574-201ENSMUST00000173127 845 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 n-R5s130-201ENSMUST00000178128 119 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm24312-201ENSMUST00000178677 119 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 n-R5s106-201ENSMUST00000179060 119 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 n-R5s118-201ENSMUST00000179887 119 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm44498-201ENSMUST00000199509 111 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm45085-201ENSMUST00000209100 441 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim28Q62318 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Gm5449-201ENSMUST00000081132 357 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim28Q62318 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
Trim28Q62318 AC153524.2-202ENSMUST00000220401 1794 ntBASIC14.45□□□□□ -0.1
Trim28Q62318 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
Trim28Q62318 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC14.44□□□□□ -0.1
Trim28Q62318 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Gm42858-201ENSMUST00000202512 1704 ntBASIC14.44□□□□□ -0.1
Trim28Q62318 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 125.5 ms