Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC11.85□□□□□ -0.51
Shmt1P50431 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC11.85□□□□□ -0.51
Shmt1P50431 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC11.85□□□□□ -0.51
Shmt1P50431 Gm12791-201ENSMUST00000120788 655 ntBASIC11.85□□□□□ -0.51
Shmt1P50431 Gm10169-201ENSMUST00000121822 348 ntBASIC11.85□□□□□ -0.51
Shmt1P50431 Gm12628-201ENSMUST00000122193 382 ntBASIC11.85□□□□□ -0.51
Shmt1P50431 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC11.85□□□□□ -0.51
Shmt1P50431 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
Shmt1P50431 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Shmt1P50431 AC154305.2-201ENSMUST00000225813 901 ntBASIC11.85□□□□□ -0.51
Shmt1P50431 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Gm25580-201ENSMUST00000083409 327 ntBASIC11.85□□□□□ -0.51
Shmt1P50431 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Katnal2-205ENSMUST00000126153 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC11.85□□□□□ -0.51
Shmt1P50431 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.85□□□□□ -0.51
Shmt1P50431 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Shmt1P50431 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC11.84□□□□□ -0.51
Shmt1P50431 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm6560-201ENSMUST00000198588 1591 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm6771-201ENSMUST00000182716 1001 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm7593-201ENSMUST00000187246 644 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Gm37638-201ENSMUST00000194337 1123 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Shmt1P50431 Id2-203ENSMUST00000222667 958 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Shmt1P50431 n-R5s185-201ENSMUST00000083953 119 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC11.84□□□□□ -0.51
Shmt1P50431 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Shmt1P50431 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.84□□□□□ -0.51
Shmt1P50431 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC11.84□□□□□ -0.51
Shmt1P50431 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Shmt1P50431 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
Shmt1P50431 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
Shmt1P50431 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Shmt1P50431 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.51
Shmt1P50431 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Shmt1P50431 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Shmt1P50431 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Shmt1P50431 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Shmt1P50431 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
Shmt1P50431 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm14398-201ENSMUST00000117287 1073 ntBASIC11.83□□□□□ -0.52
Shmt1P50431 Gm13326-201ENSMUST00000118730 1011 ntBASIC11.83□□□□□ -0.52
Shmt1P50431 Gm3828-201ENSMUST00000121817 257 ntBASIC11.83□□□□□ -0.52
Shmt1P50431 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms