Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC10.48□□□□□ -0.73
Cdc40Q9DC48 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdc40Q9DC48 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Thsd7a-206ENSMUST00000172356 10998 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm11628-201ENSMUST00000117568 171 ntBASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm12795-201ENSMUST00000117594 539 ntBASIC10.47□□□□□ -0.73
Cdc40Q9DC48 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm22138-201ENSMUST00000158748 128 ntBASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm38210-201ENSMUST00000191944 809 ntBASIC10.47□□□□□ -0.73
Cdc40Q9DC48 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm10254-201ENSMUST00000052888 867 ntBASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
Cdc40Q9DC48 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Ncor2-201ENSMUST00000055256 7780 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm21092-201ENSMUST00000178995 955 ntBASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Mir6998-201ENSMUST00000183343 64 ntBASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm37981-201ENSMUST00000194280 535 ntBASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm43520-201ENSMUST00000197996 164 ntBASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm42657-201ENSMUST00000201746 211 ntBASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdc40Q9DC48 Gm44190-201ENSMUST00000205083 1401 ntBASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Rab3c-202ENSMUST00000223922 2398 ntBASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Fam186a-202ENSMUST00000100209 9334 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdc40Q9DC48 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms