Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm21939-201ENSMUST00000221137 2773 ntBASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Nop2-201ENSMUST00000044200 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Gm5846-201ENSMUST00000193146 1414 ntBASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Ddx28Q9CWT6 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Ddx3x-201ENSMUST00000000804 4692 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm6560-201ENSMUST00000198588 1591 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 AC167022.1-201ENSMUST00000218647 1458 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm45433-201ENSMUST00000209386 247 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm7293-201ENSMUST00000216682 1007 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm270-201ENSMUST00000223010 976 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Peg3-201ENSMUST00000051209 8694 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Fer1l5-202ENSMUST00000179162 6315 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Sema4g-203ENSMUST00000179305 4290 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Pde2a-202ENSMUST00000166652 3977 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ddx28Q9CWT6 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Hsdl1-204ENSMUST00000212517 2215 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Gm11509-201ENSMUST00000117358 325 ntBASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Gm12997-201ENSMUST00000120207 640 ntBASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Gm18038-201ENSMUST00000197900 485 ntBASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Gm43692-201ENSMUST00000198236 1062 ntBASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Gm8385-201ENSMUST00000058999 643 ntBASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Zfp384-201ENSMUST00000046064 3108 ntTSL 5 BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ddx28Q9CWT6 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms