Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm23255-201ENSMUST00000102244 110 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm23595-201ENSMUST00000104306 130 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm12986-201ENSMUST00000119037 967 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm6758-201ENSMUST00000119643 1055 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm5395-201ENSMUST00000121650 915 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm6352-201ENSMUST00000203583 1134 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm9204-201ENSMUST00000212641 947 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm4930-201ENSMUST00000219926 1087 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 AC154435.1-201ENSMUST00000223938 959 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 CT025618.1-203ENSMUST00000227008 589 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Gm6157-201ENSMUST00000199935 1897 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Clp1Q99LI9 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC11.91□□□□□ -0.5
Clp1Q99LI9 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC11.91□□□□□ -0.5
Clp1Q99LI9 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm13366-201ENSMUST00000122198 970 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm22344-201ENSMUST00000122642 278 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm15787-203ENSMUST00000130892 1250 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm25872-201ENSMUST00000177784 100 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Mir8091-201ENSMUST00000183602 139 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Mir6953-201ENSMUST00000184745 68 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Ighv5-8-202ENSMUST00000191967 337 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm42511-201ENSMUST00000196160 234 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Gm7880-201ENSMUST00000203748 871 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 AC158986.2-201ENSMUST00000227487 618 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Clp1Q99LI9 Prss23os-202ENSMUST00000179361 1362 ntBASIC11.9□□□□□ -0.5
Clp1Q99LI9 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Clp1Q99LI9 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
Clp1Q99LI9 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Clp1Q99LI9 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.9□□□□□ -0.51
Clp1Q99LI9 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Gm44153-201ENSMUST00000204162 1580 ntBASIC11.89□□□□□ -0.51
Clp1Q99LI9 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Clp1Q99LI9 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Clp1Q99LI9 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms