Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm8707-201ENSMUST00000183325 980 ntBASIC11.53□□□□□ -0.56
Sox1P53783 Gm37597-201ENSMUST00000191853 382 ntBASIC11.53□□□□□ -0.56
Sox1P53783 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC11.53□□□□□ -0.56
Sox1P53783 Gm44304-201ENSMUST00000200509 145 ntBASIC11.53□□□□□ -0.56
Sox1P53783 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC11.53□□□□□ -0.56
Sox1P53783 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC11.53□□□□□ -0.56
Sox1P53783 CT009754.4-201ENSMUST00000221430 565 ntBASIC11.53□□□□□ -0.56
Sox1P53783 Cacna2d3-208ENSMUST00000225985 918 ntBASIC11.53□□□□□ -0.56
Sox1P53783 CT010505.2-201ENSMUST00000227918 998 ntBASIC11.53□□□□□ -0.56
Sox1P53783 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Fam186a-201ENSMUST00000062631 759 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.53□□□□□ -0.56
Sox1P53783 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sox1P53783 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sox1P53783 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.52□□□□□ -0.56
Sox1P53783 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Sox1P53783 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.52□□□□□ -0.56
Sox1P53783 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Sox1P53783 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sox1P53783 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Gm5510-201ENSMUST00000117826 486 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Gm14633-201ENSMUST00000121152 470 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Gm14363-201ENSMUST00000122304 409 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 2810403D21Rik-204ENSMUST00000144421 747 ntTSL 3 BASIC11.52□□□□□ -0.57
Sox1P53783 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Tcl1-203ENSMUST00000175652 535 ntTSL 2 BASIC11.52□□□□□ -0.57
Sox1P53783 Rab26-204ENSMUST00000176533 965 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC11.52□□□□□ -0.57
Sox1P53783 Gm5851-201ENSMUST00000194132 1204 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Gm18555-201ENSMUST00000197935 584 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Sox1P53783 Gm44605-201ENSMUST00000206892 949 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Gm3926-201ENSMUST00000223378 1123 ntBASIC11.52□□□□□ -0.57
Sox1P53783 AC133517.1-201ENSMUST00000225825 594 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Gm8618-201ENSMUST00000097570 432 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.52□□□□□ -0.57
Sox1P53783 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 Gm30504-201ENSMUST00000209316 1688 ntTSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.52□□□□□ -0.57
Sox1P53783 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox1P53783 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC11.52□□□□□ -0.57
Sox1P53783 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.51□□□□□ -0.57
Sox1P53783 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Sox1P53783 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Sox1P53783 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox1P53783 Tomm5-203ENSMUST00000107809 738 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm14997-201ENSMUST00000119232 636 ntBASIC11.51□□□□□ -0.57
Sox1P53783 Gm6238-201ENSMUST00000120999 465 ntBASIC11.51□□□□□ -0.57
Sox1P53783 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm25154-201ENSMUST00000157123 119 ntBASIC11.51□□□□□ -0.57
Sox1P53783 Gm16552-201ENSMUST00000162348 685 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm37436-201ENSMUST00000193842 1085 ntBASIC11.51□□□□□ -0.57
Sox1P53783 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm44540-201ENSMUST00000205640 354 ntBASIC11.51□□□□□ -0.57
Sox1P53783 Gm31374-201ENSMUST00000213885 619 ntTSL 5 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm36172-201ENSMUST00000219852 723 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox1P53783 Gm5191-201ENSMUST00000222882 1236 ntBASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms