Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Cdx2P43241 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.7
Cdx2P43241 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Cdx2P43241 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC10.7□□□□□ -0.7
Cdx2P43241 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm6758-201ENSMUST00000119643 1055 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC10.7□□□□□ -0.7
Cdx2P43241 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm27440-201ENSMUST00000184785 107 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm9353-201ENSMUST00000200472 604 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 CT030135.2-201ENSMUST00000225255 893 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 AC154407.1-201ENSMUST00000226777 526 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 Gm26782-203ENSMUST00000227103 751 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Cdx2P43241 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Mir326-201ENSMUST00000083637 95 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm44831-201ENSMUST00000208469 2989 ntBASIC10.7□□□□□ -0.7
Cdx2P43241 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC10.7□□□□□ -0.7
Cdx2P43241 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx2P43241 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Hsd3b3-204ENSMUST00000107019 1533 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm12912-201ENSMUST00000121596 1381 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Gm5822-201ENSMUST00000161562 1378 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 AC022682.1-201ENSMUST00000224624 2023 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Cdx2P43241 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm18733-202ENSMUST00000174447 401 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Mrip-ps-201ENSMUST00000184613 940 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC10.69□□□□□ -0.7
Cdx2P43241 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Arhgef33-207ENSMUST00000224966 490 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Cdx2P43241 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Cdx2P43241 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Cdx2P43241 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC10.69□□□□□ -0.7
Cdx2P43241 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdx2P43241 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms