Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Hdac9-206ENSMUST00000209990 3072 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Trim9-205ENSMUST00000221041 3767 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Dhx40-201ENSMUST00000018569 3813 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Copa-206ENSMUST00000135192 4622 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Gm11989-201ENSMUST00000117240 672 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Gm6023-201ENSMUST00000118217 606 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Gm11362-201ENSMUST00000118838 850 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC9.25□□□□□ -0.93
Hmgb3O54879 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Olfr1122-202ENSMUST00000215371 5036 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Phf8-203ENSMUST00000112662 3732 ntAPPRIS P3 TSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Cdc42bpa-203ENSMUST00000097453 6704 ntTSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Mlh3-201ENSMUST00000019378 5463 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Gm10152-201ENSMUST00000193475 1344 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Cdk12-202ENSMUST00000107538 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Mon2-203ENSMUST00000170935 5302 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Ammecr1l-201ENSMUST00000115808 4769 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 AC173482.6-201ENSMUST00000225889 1741 ntBASIC9.25□□□□□ -0.93
Hmgb3O54879 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
Hmgb3O54879 Fam168a-201ENSMUST00000049053 6609 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Hmgb3O54879 Gm12846-201ENSMUST00000120431 1373 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Itgad-204ENSMUST00000177111 3845 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Myo1c-202ENSMUST00000102504 4659 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Olfr15-203ENSMUST00000214590 6240 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Fmod-201ENSMUST00000048183 3120 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm13297-201ENSMUST00000120205 934 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm9034-201ENSMUST00000182071 1005 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC9.24□□□□□ -0.93
Hmgb3O54879 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm43118-201ENSMUST00000199149 775 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm9004-201ENSMUST00000218739 1222 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 AC154252.2-201ENSMUST00000223593 767 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 CT009713.10-202ENSMUST00000225734 696 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 AC113031.8-201ENSMUST00000227856 631 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Snora73a-201ENSMUST00000082453 205 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Tsc1-202ENSMUST00000113867 7682 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Tsc1-201ENSMUST00000028155 7674 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC9.24□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 114 ms