Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Gm33366-201ENSMUST00000195583 3827 ntBASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
H2afb2S4R1M3 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm8302-201ENSMUST00000119217 852 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm8876-201ENSMUST00000120768 1122 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm15432-201ENSMUST00000121106 195 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm25492-201ENSMUST00000157383 129 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm29067-201ENSMUST00000190821 470 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC11.23□□□□□ -0.61
H2afb2S4R1M3 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
H2afb2S4R1M3 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm10051-201ENSMUST00000145209 414 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm19246-201ENSMUST00000173599 255 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm43482-201ENSMUST00000202797 1861 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm44315-201ENSMUST00000203041 219 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm17831-201ENSMUST00000205579 900 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 AC122350.1-201ENSMUST00000228135 533 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
H2afb2S4R1M3 Gm5451-201ENSMUST00000080545 579 ntBASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms