Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Gm37613-201ENSMUST00000195677 3580 ntBASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm37368-201ENSMUST00000193173 3212 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm12857-201ENSMUST00000117678 592 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm17391-201ENSMUST00000171036 126 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm8100-201ENSMUST00000182906 988 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm8285-201ENSMUST00000208293 759 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gm10686-201ENSMUST00000215389 3247 ntBASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Sh3rf1Q69ZI1 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 AC122273.1-201ENSMUST00000213634 2327 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm15573-201ENSMUST00000119487 540 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm8199-201ENSMUST00000121323 823 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Mir7686-201ENSMUST00000200604 57 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm44551-201ENSMUST00000208804 171 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm45909-201ENSMUST00000212413 1031 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm17872-201ENSMUST00000222550 532 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm10829-201ENSMUST00000202084 2988 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm9072-201ENSMUST00000218390 1514 ntBASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms