Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm12621-201ENSMUST00000177760 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12615-201ENSMUST00000177970 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12622-201ENSMUST00000177975 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12627-201ENSMUST00000178412 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12625-201ENSMUST00000179122 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12614-201ENSMUST00000179586 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12613-201ENSMUST00000180323 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm10731-201ENSMUST00000181171 448 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm37458-201ENSMUST00000194055 410 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm37905-201ENSMUST00000195310 341 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm14267-206ENSMUST00000226870 1209 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm6560-201ENSMUST00000198588 1591 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Gm13135-201ENSMUST00000117628 3121 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Gm13422-201ENSMUST00000118834 504 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Gm19459-201ENSMUST00000176240 835 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Gm43058-201ENSMUST00000197645 625 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 AC154680.1-201ENSMUST00000224376 859 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Gm9415-201ENSMUST00000200462 1321 ntBASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Upf3bQ3ULL6 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 AC155245.1-201ENSMUST00000222266 1804 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gm15131-201ENSMUST00000119124 595 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gm12129-201ENSMUST00000120104 1147 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Mup-ps29-201ENSMUST00000122281 202 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gm24992-201ENSMUST00000157412 130 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gm45770-201ENSMUST00000212105 616 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms