Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tti2-204ENSMUST00000210129 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Lig3P97386 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC12.39□□□□□ -0.43
Lig3P97386 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Lig3P97386 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.39□□□□□ -0.43
Lig3P97386 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lig3P97386 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.39□□□□□ -0.43
Lig3P97386 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC12.38□□□□□ -0.43
Lig3P97386 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC12.38□□□□□ -0.43
Lig3P97386 Gm11836-201ENSMUST00000121022 441 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Gm12783-201ENSMUST00000121425 397 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.38□□□□□ -0.43
Lig3P97386 Gm15744-201ENSMUST00000161734 213 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gm8815-201ENSMUST00000173809 620 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gm8956-201ENSMUST00000203939 825 ntBASIC12.38□□□□□ -0.43
Lig3P97386 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.38□□□□□ -0.43
Lig3P97386 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gm3318-201ENSMUST00000217604 1183 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Gm7959-201ENSMUST00000221823 1078 ntBASIC12.38□□□□□ -0.43
Lig3P97386 CT025602.2-201ENSMUST00000226553 772 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Olfr370-203ENSMUST00000214156 2475 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.38□□□□□ -0.43
Lig3P97386 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Lig3P97386 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Lig3P97386 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lig3P97386 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lig3P97386 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lig3P97386 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lig3P97386 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Gm25076-201ENSMUST00000104098 132 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Gm11422-201ENSMUST00000118925 1103 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lig3P97386 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lig3P97386 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Gm37458-201ENSMUST00000194055 410 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC12.37□□□□□ -0.43
Lig3P97386 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.37□□□□□ -0.43
Lig3P97386 AC136376.2-201ENSMUST00000228819 490 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Gm4604-201ENSMUST00000025040 390 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lig3P97386 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lig3P97386 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lig3P97386 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Lig3P97386 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC12.37□□□□□ -0.43
Lig3P97386 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Gm43963-201ENSMUST00000203466 2488 ntBASIC12.37□□□□□ -0.43
Lig3P97386 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lig3P97386 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lig3P97386 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lig3P97386 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms