Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Gm13812-201ENSMUST00000118061 1347 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Gm13810-201ENSMUST00000118584 1347 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 Gm14071-201ENSMUST00000117817 509 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Gm12266-201ENSMUST00000120311 962 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Gm5714-201ENSMUST00000197343 566 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Gm18753-201ENSMUST00000201000 566 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Gm19208-201ENSMUST00000213861 912 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC10.18□□□□□ -0.78
Rfx3P48381 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
Rfx3P48381 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Rfx3P48381 Fam198b-202ENSMUST00000118853 6729 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC10.18□□□□□ -0.78
Rfx3P48381 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Rfx3P48381 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC10.17□□□□□ -0.78
Rfx3P48381 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm44826-201ENSMUST00000207648 2332 ntBASIC10.17□□□□□ -0.78
Rfx3P48381 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Mecomos-201ENSMUST00000125611 5510 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC10.17□□□□□ -0.78
Rfx3P48381 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm3329-201ENSMUST00000159873 556 ntBASIC10.17□□□□□ -0.78
Rfx3P48381 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm45186-201ENSMUST00000206874 478 ntBASIC10.17□□□□□ -0.78
Rfx3P48381 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm21811-201ENSMUST00000096485 930 ntBASIC10.17□□□□□ -0.78
Rfx3P48381 Gm8752-201ENSMUST00000173427 1694 ntBASIC10.17□□□□□ -0.78
Rfx3P48381 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Rfx3P48381 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Rfx3P48381 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Phf21a-202ENSMUST00000068702 6023 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
Rfx3P48381 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Rfx3P48381 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC10.16□□□□□ -0.78
Rfx3P48381 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Rfx3P48381 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Cacna1c-226ENSMUST00000219833 7591 ntTSL 5 BASIC10.16□□□□□ -0.78
Rfx3P48381 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Rfx3P48381 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms