Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Rfx1P48377 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Sirpa-204ENSMUST00000103203 3674 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
Rfx1P48377 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Rfx1P48377 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Rfx1P48377 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 AC124732.3-201ENSMUST00000221835 1765 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm12742-201ENSMUST00000117326 410 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Gm5380-201ENSMUST00000119296 2136 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm43184-201ENSMUST00000197247 542 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm17812-201ENSMUST00000204935 318 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm6722-201ENSMUST00000221586 390 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm26448-201ENSMUST00000082446 203 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 AC166359.1-201ENSMUST00000220243 1871 ntBASIC13.41□□□□□ -0.26
Rfx1P48377 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Rfx1P48377 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Rfx1P48377 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Rfx1P48377 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Rfx1P48377 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 Gm18210-201ENSMUST00000209001 1524 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Mir7085-201ENSMUST00000184353 66 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Gm18062-201ENSMUST00000208020 547 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Gm18055-201ENSMUST00000208254 547 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Gm4978-201ENSMUST00000071565 801 ntBASIC13.4□□□□□ -0.26
Rfx1P48377 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx1P48377 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Rfx1P48377 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Rfx1P48377 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx1P48377 Csnk1g1-214ENSMUST00000206594 2482 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Rfx1P48377 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx1P48377 Gm45532-201ENSMUST00000210342 3620 ntBASIC13.39□□□□□ -0.27
Rfx1P48377 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC13.39□□□□□ -0.27
Rfx1P48377 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Rfx1P48377 Slx1b-203ENSMUST00000144897 3152 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx1P48377 Fndc7-207ENSMUST00000180063 4820 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms