Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Atxn7l3-203ENSMUST00000107134 3712 ntAPPRIS ALT1 TSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Flnb-201ENSMUST00000052678 9100 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Hmgb3O54879 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Hmgb3O54879 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Ighv5-13-201ENSMUST00000193550 290 ntBASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm19287-201ENSMUST00000203190 358 ntBASIC9.27□□□□□ -0.93
Hmgb3O54879 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm10699-201ENSMUST00000098916 2130 ntBASIC9.27□□□□□ -0.93
Hmgb3O54879 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Sema4g-203ENSMUST00000179305 4290 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gtf2i-222ENSMUST00000174354 4084 ntAPPRIS ALT2 TSL 2 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Hmgb3O54879 Mrpl19-201ENSMUST00000032124 5000 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Akap2-204ENSMUST00000102902 6993 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 Gm44913-201ENSMUST00000208060 2990 ntBASIC9.27□□□□□ -0.93
Hmgb3O54879 Rab11b-201ENSMUST00000057373 6109 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Hmgb3O54879 AC154528.2-201ENSMUST00000228432 3023 ntBASIC9.26□□□□□ -0.93
Hmgb3O54879 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 AC124433.1-202ENSMUST00000224762 1535 ntBASIC9.26□□□□□ -0.93
Hmgb3O54879 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Vmn1r180-201ENSMUST00000173816 5060 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Fermt1-201ENSMUST00000038280 4915 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Ttll5-205ENSMUST00000110224 4647 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Rbbp6-201ENSMUST00000052135 6184 ntAPPRIS P2 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Uvssa-201ENSMUST00000087864 7326 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Dctn1-202ENSMUST00000113907 4205 ntTSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Itgad-202ENSMUST00000106237 4105 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm38230-201ENSMUST00000193572 1159 ntBASIC9.26□□□□□ -0.93
Hmgb3O54879 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Abcc9-202ENSMUST00000087527 6213 ntAPPRIS P5 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm12799-201ENSMUST00000118151 2560 ntBASIC9.26□□□□□ -0.93
Hmgb3O54879 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Abcc4-202ENSMUST00000166646 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gm45041-201ENSMUST00000207366 3108 ntBASIC9.26□□□□□ -0.93
Hmgb3O54879 Ikbkg-201ENSMUST00000004330 6918 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Hmgb3O54879 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Lhx4-201ENSMUST00000027740 5514 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Hmgb3O54879 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms