Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm23595-201ENSMUST00000104306 130 ntBASIC13.18□□□□□ -0.3
Scn11aQ9R053 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm26906-201ENSMUST00000180523 1228 ntTSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm43460-201ENSMUST00000202491 1057 ntBASIC13.18□□□□□ -0.3
Scn11aQ9R053 Olfr1335-202ENSMUST00000219094 1148 ntAPPRIS P2 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 AC164556.1-201ENSMUST00000221318 751 ntBASIC13.18□□□□□ -0.3
Scn11aQ9R053 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 CT009713.2-201ENSMUST00000225532 1149 ntBASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gstm2-202ENSMUST00000066530 854 ntTSL 3 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Olfr1335-201ENSMUST00000084313 1148 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Olfr160-202ENSMUST00000211952 3492 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Gm37264-201ENSMUST00000194916 2192 ntBASIC13.18□□□□□ -0.3
Scn11aQ9R053 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Srd5a3-203ENSMUST00000113507 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Prss23os-202ENSMUST00000179361 1362 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm23745-201ENSMUST00000104230 125 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm16288-201ENSMUST00000137940 367 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm27440-201ENSMUST00000184785 107 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm42588-201ENSMUST00000200538 1297 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Prr13-205ENSMUST00000171245 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm5395-201ENSMUST00000121650 915 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm43547-201ENSMUST00000197729 328 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm6794-201ENSMUST00000203829 457 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm6518-201ENSMUST00000208450 342 ntBASIC13.17□□□□□ -0.3
Scn11aQ9R053 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn11aQ9R053 Ino80dos-201ENSMUST00000138611 1576 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Gm19178-201ENSMUST00000217524 1819 ntBASIC13.16□□□□□ -0.3
Scn11aQ9R053 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Gm8122-201ENSMUST00000165988 1404 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn11aQ9R053 Pck2-205ENSMUST00000226352 2784 ntBASIC13.16□□□□□ -0.3
Scn11aQ9R053 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 85.8 ms