Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Gm5859-201ENSMUST00000165401 2324 ntBASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sf3b1Q99NB9 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Nudt13-207ENSMUST00000224311 1574 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Gm13022-201ENSMUST00000121181 285 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Gm5342-201ENSMUST00000181982 1003 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 AC122891.1-201ENSMUST00000218671 268 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 AC154572.1-201ENSMUST00000226098 1204 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Sf3b1Q99NB9 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm44755-201ENSMUST00000207830 2102 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm21759-201ENSMUST00000178345 1828 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm37122-201ENSMUST00000195313 1567 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Ighv2-1-201ENSMUST00000170946 353 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm4604-201ENSMUST00000025040 390 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm25201-201ENSMUST00000083093 170 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms