Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm38357-201ENSMUST00000195382 2464 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm12857-201ENSMUST00000117678 592 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm17420-201ENSMUST00000164753 153 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm27627-201ENSMUST00000183644 150 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm21156-201ENSMUST00000189693 869 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm17812-201ENSMUST00000204935 318 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm5171-201ENSMUST00000214944 1415 ntBASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Scaf4Q6PFF0 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Snord17-201ENSMUST00000104526 238 ntBASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm11663-201ENSMUST00000117888 290 ntBASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Mup-ps29-201ENSMUST00000122281 202 ntBASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm3332-201ENSMUST00000189337 928 ntBASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm21027-201ENSMUST00000219300 1236 ntBASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Scaf4Q6PFF0 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Bcl7a-202ENSMUST00000117971 4642 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Dopey2-207ENSMUST00000227156 7340 ntBASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Gm42602-201ENSMUST00000200288 3224 ntBASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Gm9200-201ENSMUST00000118513 1354 ntBASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Scaf4Q6PFF0 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms