Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm43152-201ENSMUST00000202495 1638 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Tra2b-204ENSMUST00000161286 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 BC043934-202ENSMUST00000185694 2356 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Gm14395-201ENSMUST00000120494 563 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Gm22846-201ENSMUST00000157706 270 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Uba52-ps-201ENSMUST00000183770 379 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 AC154314.2-201ENSMUST00000223677 3502 ntBASIC12.61□□□□□ -0.39
Usp49Q6P9L4 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Usp49Q6P9L4 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm23272-201ENSMUST00000104053 129 ntBASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm19246-201ENSMUST00000173599 255 ntBASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm37905-201ENSMUST00000195310 341 ntBASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm43058-201ENSMUST00000197645 625 ntBASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm43852-201ENSMUST00000202098 917 ntBASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm44315-201ENSMUST00000203041 219 ntBASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Abi1-206ENSMUST00000126112 3360 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp49Q6P9L4 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Usp49Q6P9L4 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms