Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm7841-201ENSMUST00000122108 1629 ntBASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm11509-201ENSMUST00000117358 325 ntBASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm12208-201ENSMUST00000122004 163 ntBASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm36991-201ENSMUST00000191800 648 ntBASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm4607-201ENSMUST00000206649 577 ntBASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm10288-201ENSMUST00000084614 537 ntBASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sh3rf1Q69ZI1 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm44999-201ENSMUST00000207456 1493 ntBASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm23085-201ENSMUST00000157849 293 ntBASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm43916-201ENSMUST00000205062 967 ntBASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 CT030637.1-201ENSMUST00000228016 669 ntBASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 AC159103.1-201ENSMUST00000228325 429 ntBASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sh3rf1Q69ZI1 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 AC166359.1-201ENSMUST00000220243 1871 ntBASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sh3rf1Q69ZI1 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms