Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Sox9Q04887 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Sox9Q04887 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Gm38089-201ENSMUST00000193585 1514 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.71□□□□□ -0.53
Sox9Q04887 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Sox9Q04887 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC11.71□□□□□ -0.53
Sox9Q04887 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Gm5308-201ENSMUST00000196752 1354 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Gm17836-201ENSMUST00000191976 1302 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Gm11540-201ENSMUST00000117457 780 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Gm14006-201ENSMUST00000122132 981 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.71□□□□□ -0.53
Sox9Q04887 Gm23582-201ENSMUST00000158530 139 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sox9Q04887 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.71□□□□□ -0.53
Sox9Q04887 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sox9Q04887 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sox9Q04887 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sox9Q04887 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sox9Q04887 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC11.71□□□□□ -0.53
Sox9Q04887 Gm19918-201ENSMUST00000194858 400 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC11.71□□□□□ -0.53
Sox9Q04887 Gm18256-201ENSMUST00000209087 907 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 AC241616.1-201ENSMUST00000213741 166 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 AC134913.2-201ENSMUST00000225017 771 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 AC129217.1-201ENSMUST00000225181 642 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sox9Q04887 n-R5s71-201ENSMUST00000093668 119 ntBASIC11.71□□□□□ -0.53
Sox9Q04887 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Sox9Q04887 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox9Q04887 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Sox9Q04887 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Gm19817-201ENSMUST00000199764 2132 ntBASIC11.71□□□□□ -0.54
Sox9Q04887 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox9Q04887 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
Sox9Q04887 Gm9133-201ENSMUST00000118289 540 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Gm7805-201ENSMUST00000154348 448 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 Gm19013-201ENSMUST00000183895 1222 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 Gm19014-201ENSMUST00000184828 1189 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 AC154433.1-201ENSMUST00000224401 1183 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 AC118639.1-202ENSMUST00000226957 653 ntBASIC11.7□□□□□ -0.54
Sox9Q04887 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.7□□□□□ -0.54
Sox9Q04887 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Sox9Q04887 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms