Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC11.57□□□□□ -0.56
Sox1P53783 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Rfc4-203ENSMUST00000115338 1279 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Gm13777-201ENSMUST00000118208 345 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Gm13002-201ENSMUST00000119286 682 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Gm14524-201ENSMUST00000121066 683 ntBASIC11.57□□□□□ -0.56
Sox1P53783 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 2410003L11Rik-202ENSMUST00000145262 642 ntTSL 3 BASIC11.57□□□□□ -0.56
Sox1P53783 Mir3100-201ENSMUST00000174918 65 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Gm3898-201ENSMUST00000180221 613 ntTSL 5 BASIC11.57□□□□□ -0.56
Sox1P53783 Gm27149-201ENSMUST00000184716 1266 ntBASIC11.57□□□□□ -0.56
Sox1P53783 4930412E21Rik-201ENSMUST00000194267 778 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Gm21631-201ENSMUST00000195041 754 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Gm42908-201ENSMUST00000197508 870 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Gm45893-201ENSMUST00000211899 247 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Gm7727-201ENSMUST00000219830 671 ntBASIC11.57□□□□□ -0.56
Sox1P53783 CT010431.1-201ENSMUST00000221249 1080 ntBASIC11.57□□□□□ -0.56
Sox1P53783 AC163646.3-201ENSMUST00000228879 772 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Rps4l-ps-201ENSMUST00000059737 768 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Sox1P53783 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Sox1P53783 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.57□□□□□ -0.56
Sox1P53783 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sox1P53783 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.57□□□□□ -0.56
Sox1P53783 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Gm9-201ENSMUST00000101636 817 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Mir704-201ENSMUST00000102106 77 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC11.56□□□□□ -0.56
Sox1P53783 Rps23-ps1-201ENSMUST00000116115 425 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Gm16140-201ENSMUST00000117191 1060 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Gm14152-201ENSMUST00000127020 1073 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Gm13580-201ENSMUST00000131457 566 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Rps23-ps2-201ENSMUST00000146939 432 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Spef2-203ENSMUST00000159368 1422 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Gm2663-201ENSMUST00000166306 862 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Gm32102-201ENSMUST00000196885 241 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Gm44420-201ENSMUST00000203669 490 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 AC156633.1-201ENSMUST00000215971 614 ntTSL 2 BASIC11.56□□□□□ -0.56
Sox1P53783 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC11.56□□□□□ -0.56
Sox1P53783 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Sox1P53783 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Sox1P53783 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Rubie-203ENSMUST00000227803 2430 ntBASIC11.56□□□□□ -0.56
Sox1P53783 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sox1P53783 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC11.56□□□□□ -0.56
Sox1P53783 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 AC160405.1-201ENSMUST00000218207 1545 ntBASIC11.55□□□□□ -0.56
Sox1P53783 AC116503.1-201ENSMUST00000215445 2192 ntBASIC11.55□□□□□ -0.56
Sox1P53783 Gm13347-201ENSMUST00000120298 1353 ntBASIC11.55□□□□□ -0.56
Sox1P53783 2700038G22Rik-201ENSMUST00000181574 1375 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.55□□□□□ -0.56
Sox1P53783 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC11.55□□□□□ -0.56
Sox1P53783 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Sox1P53783 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Sox1P53783 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Sox1P53783 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Sox1P53783 Gm8873-201ENSMUST00000217847 1439 ntBASIC11.55□□□□□ -0.56
Sox1P53783 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sox1P53783 Gm15476-201ENSMUST00000118247 1191 ntBASIC11.55□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms