Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.2□□□□□ -0.46
RaraP11416 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
RaraP11416 AC131586.1-201ENSMUST00000228844 2964 ntBASIC12.19□□□□□ -0.46
RaraP11416 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
RaraP11416 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
RaraP11416 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
RaraP11416 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Gm8876-201ENSMUST00000120768 1122 ntBASIC12.19□□□□□ -0.46
RaraP11416 Gm15595-201ENSMUST00000120840 961 ntBASIC12.19□□□□□ -0.46
RaraP11416 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.19□□□□□ -0.46
RaraP11416 Gm27552-201ENSMUST00000183351 62 ntBASIC12.19□□□□□ -0.46
RaraP11416 Gm27844-201ENSMUST00000183613 62 ntBASIC12.19□□□□□ -0.46
RaraP11416 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
RaraP11416 AC159246.1-201ENSMUST00000214478 249 ntBASIC12.19□□□□□ -0.46
RaraP11416 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.19□□□□□ -0.46
RaraP11416 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC12.19□□□□□ -0.46
RaraP11416 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
RaraP11416 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC12.19□□□□□ -0.46
RaraP11416 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC12.19□□□□□ -0.46
RaraP11416 Gm8752-201ENSMUST00000173427 1694 ntBASIC12.19□□□□□ -0.46
RaraP11416 Fbxo8-201ENSMUST00000040218 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 CU062626.3-201ENSMUST00000225522 1411 ntBASIC12.19□□□□□ -0.46
RaraP11416 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC12.19□□□□□ -0.46
RaraP11416 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
RaraP11416 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC12.18□□□□□ -0.46
RaraP11416 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.18□□□□□ -0.46
RaraP11416 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
RaraP11416 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.18□□□□□ -0.46
RaraP11416 Mup-ps29-201ENSMUST00000122281 202 ntBASIC12.18□□□□□ -0.46
RaraP11416 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC12.18□□□□□ -0.46
RaraP11416 Gm22846-201ENSMUST00000157706 270 ntBASIC12.18□□□□□ -0.46
RaraP11416 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC12.18□□□□□ -0.46
RaraP11416 Gm9540-201ENSMUST00000188230 478 ntBASIC12.18□□□□□ -0.46
RaraP11416 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.18□□□□□ -0.46
RaraP11416 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.18□□□□□ -0.46
RaraP11416 Gm42867-201ENSMUST00000202995 469 ntBASIC12.18□□□□□ -0.46
RaraP11416 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC12.18□□□□□ -0.46
RaraP11416 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.18□□□□□ -0.46
RaraP11416 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.18□□□□□ -0.46
RaraP11416 AC114573.1-201ENSMUST00000224120 1210 ntBASIC12.18□□□□□ -0.46
RaraP11416 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
RaraP11416 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.18□□□□□ -0.46
RaraP11416 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
RaraP11416 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC12.18□□□□□ -0.46
RaraP11416 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
RaraP11416 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
RaraP11416 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
RaraP11416 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC12.18□□□□□ -0.46
RaraP11416 AC124732.3-201ENSMUST00000221835 1765 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms