Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Itga3-202ENSMUST00000107739 4636 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Zfp804b-202ENSMUST00000200317 4430 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Pcdhga2-201ENSMUST00000193869 4689 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Atp2b2-202ENSMUST00000101044 4586 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Ano1-202ENSMUST00000118556 4566 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Slc38a9-201ENSMUST00000052514 8910 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Phtf1os-201ENSMUST00000160110 4046 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm5124-202ENSMUST00000132683 2083 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Zfp454-201ENSMUST00000050595 2059 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Fbxo8-201ENSMUST00000040218 3571 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm24548-201ENSMUST00000158650 108 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm16379-201ENSMUST00000161469 348 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm29127-201ENSMUST00000188304 517 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm8762-201ENSMUST00000193486 339 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm19963-201ENSMUST00000208413 1255 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 AC163667.3-201ENSMUST00000225774 222 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Galnt16-206ENSMUST00000219993 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm4366-201ENSMUST00000201488 1342 ntBASIC9.29□□□□□ -0.92
Hmgb3O54879 Abi1-206ENSMUST00000126112 3360 ntAPPRIS ALT1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Dmxl2-201ENSMUST00000118163 10614 ntAPPRIS P2 TSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Nod2-201ENSMUST00000054324 4719 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Nampt-201ENSMUST00000020886 4527 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Mgll-204ENSMUST00000113585 3676 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Nrp1-201ENSMUST00000026917 3597 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Brpf1-208ENSMUST00000203577 4468 ntTSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Crispld1-201ENSMUST00000095075 4472 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Gm8801-201ENSMUST00000173255 1064 ntBASIC9.28□□□□□ -0.92
Hmgb3O54879 Gm5597-201ENSMUST00000182353 1193 ntBASIC9.28□□□□□ -0.92
Hmgb3O54879 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tecta-201ENSMUST00000042190 7338 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Thbs1-201ENSMUST00000039559 5848 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Vps8-202ENSMUST00000096192 4942 ntTSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 AC169511.2-201ENSMUST00000226674 2063 ntBASIC9.28□□□□□ -0.92
Hmgb3O54879 Zfp709-203ENSMUST00000188685 7186 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Pde6h-202ENSMUST00000137768 5940 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hmgb3O54879 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.92
Hmgb3O54879 Gm4864-201ENSMUST00000219894 1461 ntBASIC9.28□□□□□ -0.92
Hmgb3O54879 Lhx9-202ENSMUST00000046870 3645 ntAPPRIS ALT1 TSL 5 BASIC9.27□□□□□ -0.92
Hmgb3O54879 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
Hmgb3O54879 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.92
Hmgb3O54879 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
Hmgb3O54879 AC126444.1-201ENSMUST00000225938 1768 ntBASIC9.27□□□□□ -0.92
Hmgb3O54879 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
Hmgb3O54879 Pde2a-202ENSMUST00000166652 3977 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.92
Hmgb3O54879 Cxcl12-201ENSMUST00000073043 5627 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms