Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm13665-201ENSMUST00000120830 528 ntBASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm9353-201ENSMUST00000200472 604 ntBASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Oxsm-201ENSMUST00000022311 3759 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Gm45089-201ENSMUST00000208082 2040 ntBASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC10.16□□□□□ -0.78
Pcdh1F7BJK1 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Csnk1g1-214ENSMUST00000206594 2482 ntAPPRIS P2 TSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Ccdc130-202ENSMUST00000098578 2119 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm28424-201ENSMUST00000187393 1319 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm13350-201ENSMUST00000120519 479 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Mir1896-201ENSMUST00000122641 81 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 AA914427-201ENSMUST00000193194 1166 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm5852-201ENSMUST00000194119 1021 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm38317-201ENSMUST00000195564 343 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm7172-201ENSMUST00000218047 1152 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Gm43908-201ENSMUST00000205074 1472 ntBASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC10.15□□□□□ -0.78
Pcdh1F7BJK1 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Pcdh1F7BJK1 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC10.15□□□□□ -0.79
Pcdh1F7BJK1 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.79
Pcdh1F7BJK1 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Uaca-202ENSMUST00000214354 4417 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
Pcdh1F7BJK1 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC10.14□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms