Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm23612-201ENSMUST00000103823 110 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm11996-201ENSMUST00000117538 915 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm12712-201ENSMUST00000120676 801 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm13981-201ENSMUST00000122360 447 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm23576-201ENSMUST00000179918 110 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm42433-201ENSMUST00000196806 940 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm43506-201ENSMUST00000200675 753 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 AC160929.1-201ENSMUST00000221247 415 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 AC126799.1-201ENSMUST00000221976 246 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 AC122811.1-201ENSMUST00000222257 2921 ntBASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp40Q8BWR4 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Gm13019-201ENSMUST00000120000 276 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Gm11502-201ENSMUST00000120917 1211 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Gm26272-201ENSMUST00000179241 132 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Mir6923-201ENSMUST00000184592 72 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Gm37852-201ENSMUST00000193027 350 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Gm43778-201ENSMUST00000199438 199 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Chordc1-202ENSMUST00000213605 519 ntTSL 2 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp40Q8BWR4 AC090962.2-201ENSMUST00000225064 1801 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 AC167565.1-201ENSMUST00000226980 1833 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm19817-201ENSMUST00000199764 2132 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm13047-201ENSMUST00000117116 815 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm25677-201ENSMUST00000174983 72 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm5267-201ENSMUST00000191574 1045 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Gm7880-201ENSMUST00000203748 871 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC15.4■□□□□ 0.06
Usp40Q8BWR4 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms