Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm13888-201ENSMUST00000119148 422 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm11667-201ENSMUST00000119828 486 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm3332-201ENSMUST00000189337 928 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 AC166992.1-201ENSMUST00000216356 565 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr1347-205ENSMUST00000220413 964 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Ginm1-202ENSMUST00000065124 300 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm10179-201ENSMUST00000086233 688 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sh3rf1Q69ZI1 Gm37600-201ENSMUST00000193764 3292 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm24891-201ENSMUST00000104391 136 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm12029-201ENSMUST00000120073 832 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm15782-201ENSMUST00000121073 445 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Mir6546-201ENSMUST00000184460 62 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm28686-201ENSMUST00000187404 609 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm6439-201ENSMUST00000199849 862 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm43377-201ENSMUST00000201640 455 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm6905-201ENSMUST00000205729 511 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm4157-201ENSMUST00000211647 679 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sh3rf1Q69ZI1 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms