Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm14740-201ENSMUST00000118538 1150 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm25492-201ENSMUST00000157383 129 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Mir1943-201ENSMUST00000158276 73 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm6485-201ENSMUST00000160676 439 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm9550-201ENSMUST00000161130 862 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm17391-201ENSMUST00000171036 126 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 AC154257.1-202ENSMUST00000224729 843 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm5468-202ENSMUST00000227851 682 ntBASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Upf3bQ3ULL6 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
Upf3bQ3ULL6 AC122291.1-201ENSMUST00000228937 5748 ntBASIC12.08□□□□□ -0.47
Upf3bQ3ULL6 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC12.08□□□□□ -0.47
Upf3bQ3ULL6 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
Upf3bQ3ULL6 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm12463-201ENSMUST00000118271 849 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm14942-201ENSMUST00000119642 336 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm37299-201ENSMUST00000193951 826 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm42867-201ENSMUST00000202995 469 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm44980-201ENSMUST00000205826 314 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm18974-201ENSMUST00000221478 1031 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 CT025602.2-201ENSMUST00000226553 772 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Gm43963-201ENSMUST00000203466 2488 ntBASIC12.08□□□□□ -0.48
Upf3bQ3ULL6 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm14395-201ENSMUST00000120494 563 ntBASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm21778-201ENSMUST00000178779 471 ntBASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm7467-201ENSMUST00000185173 652 ntBASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms