Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Cux1P53564 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 AC166361.2-201ENSMUST00000219269 1415 ntBASIC17.12■□□□□ 0.33
Cux1P53564 Gm37931-201ENSMUST00000194686 2866 ntBASIC17.12■□□□□ 0.33
Cux1P53564 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gm12463-201ENSMUST00000118271 849 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC17.11■□□□□ 0.33
Cux1P53564 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC17.11■□□□□ 0.33
Cux1P53564 Gm24943-201ENSMUST00000158329 433 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Fbxo16-201ENSMUST00000169656 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gm16755-201ENSMUST00000180595 933 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Arl14-201ENSMUST00000183126 1200 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cux1P53564 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC17.11■□□□□ 0.33
Cux1P53564 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC17.11■□□□□ 0.33
Cux1P53564 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Gm7047-201ENSMUST00000196224 1063 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Gm3527-201ENSMUST00000198905 460 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC17.11■□□□□ 0.33
Cux1P53564 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gm45527-201ENSMUST00000211052 774 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Gm9736-201ENSMUST00000219969 834 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cux1P53564 CT009713.2-201ENSMUST00000225532 1149 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Ms4a6b-201ENSMUST00000025580 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC17.11■□□□□ 0.33
Cux1P53564 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cux1P53564 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Cux1P53564 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gm23582-201ENSMUST00000158530 139 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Mipep-ps-201ENSMUST00000177439 291 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Mir8111-201ENSMUST00000184463 137 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Gm37860-201ENSMUST00000195380 1034 ntBASIC17.11■□□□□ 0.33
Cux1P53564 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC17.11■□□□□ 0.33
Cux1P53564 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cux1P53564 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cux1P53564 Gm42480-201ENSMUST00000198434 2595 ntBASIC17.11■□□□□ 0.33
Cux1P53564 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Gfra2-203ENSMUST00000227697 1323 ntBASIC17.1■□□□□ 0.33
Cux1P53564 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Gm37844-201ENSMUST00000192473 4097 ntBASIC17.1■□□□□ 0.33
Cux1P53564 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cux1P53564 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cux1P53564 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cux1P53564 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Mrps36-203ENSMUST00000109333 701 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Gm16441-201ENSMUST00000138176 924 ntBASIC17.1■□□□□ 0.33
Cux1P53564 Gm6038-201ENSMUST00000154310 948 ntBASIC17.1■□□□□ 0.33
Cux1P53564 Gm5040-201ENSMUST00000218609 800 ntBASIC17.1■□□□□ 0.33
Cux1P53564 AC134860.2-201ENSMUST00000225277 1036 ntBASIC17.1■□□□□ 0.33
Cux1P53564 Ascl3-201ENSMUST00000035372 700 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Gm8684-201ENSMUST00000195078 1564 ntBASIC17.1■□□□□ 0.33
Cux1P53564 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cux1P53564 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC17.09■□□□□ 0.33
Cux1P53564 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cux1P53564 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC17.09■□□□□ 0.33
Cux1P53564 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC17.09■□□□□ 0.33
Cux1P53564 Gm12337-201ENSMUST00000119634 400 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Gm12950-201ENSMUST00000121683 417 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Gm26174-201ENSMUST00000158415 219 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Gm5244-201ENSMUST00000164001 339 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Gm7765-201ENSMUST00000182585 974 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms