Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col1a1P11087 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Gm19027-201ENSMUST00000187291 1355 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC13.11□□□□□ -0.31
Col1a1P11087 Gm23582-201ENSMUST00000158530 139 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 Gm27444-201ENSMUST00000184157 137 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 Gm43726-201ENSMUST00000199110 775 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 AC103672.1-201ENSMUST00000227502 365 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 CT010505.2-201ENSMUST00000227918 998 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Col1a1P11087 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col1a1P11087 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Col1a1P11087 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col1a1P11087 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col1a1P11087 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col1a1P11087 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col1a1P11087 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC13.11□□□□□ -0.31
Col1a1P11087 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col1a1P11087 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Col1a1P11087 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col1a1P11087 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 AC090962.2-201ENSMUST00000225064 1801 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm5510-201ENSMUST00000117826 486 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Gm14006-201ENSMUST00000122132 981 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Tnni1-204ENSMUST00000139986 651 ntTSL 5 BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm13817-201ENSMUST00000142249 604 ntTSL 3 BASIC13.1□□□□□ -0.31
Col1a1P11087 Tcl1-203ENSMUST00000175652 535 ntTSL 2 BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Arl14-201ENSMUST00000183126 1200 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Col1a1P11087 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Col1a1P11087 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC13.1□□□□□ -0.31
Col1a1P11087 AC241616.1-201ENSMUST00000213741 166 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 AC134913.2-201ENSMUST00000225017 771 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 AC101205.2-201ENSMUST00000226206 715 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm10254-201ENSMUST00000052888 867 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Hax1-201ENSMUST00000079724 1139 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm8873-201ENSMUST00000217847 1439 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col1a1P11087 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm42858-201ENSMUST00000202512 1704 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Col1a1P11087 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Col1a1P11087 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Tstd2-201ENSMUST00000107770 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC13.1□□□□□ -0.31
Col1a1P11087 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm6291-201ENSMUST00000179994 309 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm38349-201ENSMUST00000195732 462 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Gm43002-201ENSMUST00000200310 155 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms