Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Tpbpb-201ENSMUST00000080766 850 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 AC153959.1-201ENSMUST00000213617 1694 ntBASIC9.1□□□□□ -0.95
Hoxd3P09027 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Hoxd3P09027 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Hoxd3P09027 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 AC166574.4-201ENSMUST00000227165 1937 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 AC130671.2-201ENSMUST00000227224 1621 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm36970-201ENSMUST00000193688 1859 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Smgc-204ENSMUST00000109277 855 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Ccl20-202ENSMUST00000113437 794 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm12579-201ENSMUST00000118040 783 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm15172-201ENSMUST00000118945 1046 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm15131-201ENSMUST00000119124 595 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm16222-201ENSMUST00000124320 1298 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm15133-201ENSMUST00000139019 843 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm15279-201ENSMUST00000155593 288 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm26047-201ENSMUST00000157308 113 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm26653-201ENSMUST00000181537 1214 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 1810026B05Rik-201ENSMUST00000183916 432 ntTSL 3 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Mir6546-201ENSMUST00000184460 62 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Ccl20-203ENSMUST00000186832 772 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm37337-201ENSMUST00000192601 993 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm37858-201ENSMUST00000192759 1231 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Fasl-202ENSMUST00000193648 406 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm26047-202ENSMUST00000198840 115 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm43916-201ENSMUST00000205062 967 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 A730082K24Rik-201ENSMUST00000205365 465 ntTSL 3 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm45770-201ENSMUST00000212105 616 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Eqtn-201ENSMUST00000030309 1074 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Vmn1r68-201ENSMUST00000058362 960 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Chil6-201ENSMUST00000029510 1668 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Hoxd3P09027 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Skint11-204ENSMUST00000164297 1393 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm44806-201ENSMUST00000205574 2303 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Hoxd3P09027 Gm9279-201ENSMUST00000223175 1606 ntBASIC9.09□□□□□ -0.95
Hoxd3P09027 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms