Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx56Q9D0R4 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx56Q9D0R4 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx56Q9D0R4 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx56Q9D0R4 Gm42463-201ENSMUST00000198041 4886 ntBASIC11.92□□□□□ -0.5
Ddx56Q9D0R4 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm12419-201ENSMUST00000116649 636 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm14740-201ENSMUST00000118538 1150 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 AC159002.1-201ENSMUST00000226714 924 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx56Q9D0R4 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm8111-201ENSMUST00000117659 987 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm6335-201ENSMUST00000118081 1194 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm11956-201ENSMUST00000119525 512 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm7816-201ENSMUST00000119884 1194 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm15542-201ENSMUST00000121585 1194 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm4654-201ENSMUST00000183305 982 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm43186-201ENSMUST00000198130 824 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 AC141438.2-201ENSMUST00000215068 271 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 AC211878.3-201ENSMUST00000222629 2018 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 AC155245.1-201ENSMUST00000222266 1804 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Cts7-201ENSMUST00000021892 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ddx56Q9D0R4 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ddx56Q9D0R4 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ddx56Q9D0R4 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms