Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Epb41-204ENSMUST00000105970 5059 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Pogk-203ENSMUST00000131487 8692 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Rrm2b-201ENSMUST00000022901 4561 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Zfp141-203ENSMUST00000174407 4069 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 AC122273.1-201ENSMUST00000213634 2327 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Tmem184b-202ENSMUST00000178522 3314 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Baz2a-202ENSMUST00000170054 8372 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Baz2a-201ENSMUST00000045621 8369 ntAPPRIS P2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Impa1-202ENSMUST00000118410 2988 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Shank2-201ENSMUST00000097929 4418 ntTSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Kmt2a-201ENSMUST00000002095 16461 ntAPPRIS P2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Nav2-202ENSMUST00000064395 11317 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm13316-201ENSMUST00000140537 691 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm25261-201ENSMUST00000157416 134 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm24845-201ENSMUST00000158034 109 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm2546-201ENSMUST00000182630 991 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm9192-201ENSMUST00000183221 985 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 AC158982.1-201ENSMUST00000228377 901 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Dsc3-201ENSMUST00000115848 5333 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Mybpc3-201ENSMUST00000111430 4154 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC9.32□□□□□ -0.92
Hmgb3O54879 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Hmgcll1-201ENSMUST00000008052 3737 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 AC123738.2-201ENSMUST00000223791 1899 ntBASIC9.32□□□□□ -0.92
Hmgb3O54879 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hmgb3O54879 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Cep83os-201ENSMUST00000181906 6566 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 AC167565.1-201ENSMUST00000226980 1833 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 AU022252-203ENSMUST00000141112 7151 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 9530053A07Rik-204ENSMUST00000150948 7895 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm14832-201ENSMUST00000121289 322 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm8908-201ENSMUST00000121633 1024 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC9.31□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 172.7 ms