Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm39288-201ENSMUST00000210554 446 ntBASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm4811-201ENSMUST00000220879 1220 ntBASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm15528-201ENSMUST00000117821 864 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm25554-201ENSMUST00000158075 113 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 CT030653.1-201ENSMUST00000224382 1279 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Lect2-202ENSMUST00000225183 823 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b1Q99NB9 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms