Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
Rfx1P48377 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC13.51□□□□□ -0.25
Rfx1P48377 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Gm28686-201ENSMUST00000187404 609 ntBASIC13.51□□□□□ -0.25
Rfx1P48377 Gm44008-201ENSMUST00000204345 412 ntBASIC13.51□□□□□ -0.25
Rfx1P48377 Gm44651-201ENSMUST00000207343 372 ntBASIC13.51□□□□□ -0.25
Rfx1P48377 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
Rfx1P48377 AC122371.3-201ENSMUST00000223402 1061 ntBASIC13.51□□□□□ -0.25
Rfx1P48377 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC13.51□□□□□ -0.25
Rfx1P48377 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Rfx1P48377 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Rfx1P48377 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 AC154528.2-201ENSMUST00000228432 3023 ntBASIC13.51□□□□□ -0.25
Rfx1P48377 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Rfx1P48377 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Rfx1P48377 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Rfx1P48377 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx1P48377 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm9072-201ENSMUST00000218390 1514 ntBASIC13.5□□□□□ -0.25
Rfx1P48377 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 AC109214.1-201ENSMUST00000219520 1372 ntBASIC13.5□□□□□ -0.25
Rfx1P48377 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.5□□□□□ -0.25
Rfx1P48377 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
Rfx1P48377 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm10463-202ENSMUST00000195772 2889 ntBASIC13.5□□□□□ -0.25
Rfx1P48377 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Rfx1P48377 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx1P48377 Tra2b-204ENSMUST00000161286 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Rfx1P48377 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Rfx1P48377 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Rfx1P48377 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC13.49□□□□□ -0.25
Rfx1P48377 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC13.49□□□□□ -0.25
Rfx1P48377 Amz1-202ENSMUST00000120630 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
Rfx1P48377 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.49□□□□□ -0.25
Rfx1P48377 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Rfx1P48377 Gm17420-201ENSMUST00000164753 153 ntBASIC13.49□□□□□ -0.25
Rfx1P48377 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Rfx1P48377 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms