Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm26119-201ENSMUST00000175601 104 ntBASIC10.79□□□□□ -0.68
Cdx2P43241 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm5178-201ENSMUST00000219380 898 ntBASIC10.79□□□□□ -0.68
Cdx2P43241 AC129975.1-201ENSMUST00000224816 592 ntBASIC10.79□□□□□ -0.68
Cdx2P43241 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdx2P43241 Olfr372-201ENSMUST00000093434 1016 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdx2P43241 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC10.79□□□□□ -0.68
Cdx2P43241 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm9244-201ENSMUST00000056767 2129 ntBASIC10.79□□□□□ -0.68
Cdx2P43241 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC10.79□□□□□ -0.68
Cdx2P43241 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx2P43241 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC10.78□□□□□ -0.68
Cdx2P43241 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC10.78□□□□□ -0.68
Cdx2P43241 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC10.78□□□□□ -0.68
Cdx2P43241 Gm3329-201ENSMUST00000159873 556 ntBASIC10.78□□□□□ -0.68
Cdx2P43241 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Cdx2P43241 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC10.78□□□□□ -0.68
Cdx2P43241 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Gm37452-201ENSMUST00000194416 1160 ntBASIC10.78□□□□□ -0.68
Cdx2P43241 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC10.78□□□□□ -0.68
Cdx2P43241 Gm45094-201ENSMUST00000207013 617 ntBASIC10.78□□□□□ -0.68
Cdx2P43241 Gm2448-201ENSMUST00000207080 559 ntBASIC10.78□□□□□ -0.68
Cdx2P43241 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Cdx2P43241 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Cdx2P43241 Ptges3l-201ENSMUST00000093933 748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdx2P43241 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Cdx2P43241 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx2P43241 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx2P43241 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx2P43241 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx2P43241 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdx2P43241 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
Cdx2P43241 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC10.77□□□□□ -0.69
Cdx2P43241 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx2P43241 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Cdx2P43241 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx2P43241 Gm11475-201ENSMUST00000118482 476 ntBASIC10.77□□□□□ -0.69
Cdx2P43241 Gm14052-201ENSMUST00000121434 1031 ntBASIC10.77□□□□□ -0.69
Cdx2P43241 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx2P43241 Gm27956-201ENSMUST00000175604 260 ntBASIC10.77□□□□□ -0.69
Cdx2P43241 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC10.77□□□□□ -0.69
Cdx2P43241 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC10.77□□□□□ -0.69
Cdx2P43241 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdx2P43241 Gm7939-201ENSMUST00000201233 1050 ntBASIC10.77□□□□□ -0.69
Cdx2P43241 BC080696-201ENSMUST00000202858 1218 ntBASIC10.77□□□□□ -0.69
Cdx2P43241 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC10.77□□□□□ -0.69
Cdx2P43241 CT025689.1-201ENSMUST00000225214 283 ntBASIC10.77□□□□□ -0.69
Cdx2P43241 AC174797.2-201ENSMUST00000225835 165 ntBASIC10.77□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 74.7 ms