Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm19221-201ENSMUST00000221827 1477 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Adgrv1-214ENSMUST00000224088 1492 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Cntrl-202ENSMUST00000028237 7615 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Limch1-201ENSMUST00000038188 5903 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Ehmt1-202ENSMUST00000091348 4615 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm29245-201ENSMUST00000187332 1416 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm37613-201ENSMUST00000195677 3580 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm15806-201ENSMUST00000120696 955 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm25043-201ENSMUST00000158604 212 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC9.34□□□□□ -0.91
Hmgb3O54879 AC122459.1-201ENSMUST00000228373 885 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Pde10a-211ENSMUST00000149440 4897 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Plxna4-201ENSMUST00000115096 12877 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Ehmt1-204ENSMUST00000114418 4902 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Fndc1-202ENSMUST00000097425 5845 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Ipo7-201ENSMUST00000084731 4763 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Muc6-203ENSMUST00000190907 8757 ntAPPRIS P5 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Slc24a1-201ENSMUST00000037798 5213 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 D630045J12Rik-206ENSMUST00000169256 10968 ntAPPRIS P2 TSL 5 BASIC9.34□□□□□ -0.91
Hmgb3O54879 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Slc38a1-203ENSMUST00000100262 7752 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm5847-201ENSMUST00000178959 1595 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Dip2c-202ENSMUST00000169960 4801 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Ccdc62-202ENSMUST00000165148 3920 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 AC207128.2-201ENSMUST00000223708 1924 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm13326-201ENSMUST00000118730 1011 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm42627-201ENSMUST00000197347 224 ntBASIC9.33□□□□□ -0.92
Hmgb3O54879 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC9.33□□□□□ -0.92
Hmgb3O54879 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Urb1-203ENSMUST00000140920 7344 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 Epha5-201ENSMUST00000053733 7328 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hmgb3O54879 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hmgb3O54879 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 227.3 ms