Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Moxd2-201ENSMUST00000031937 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC14.02□□□□□ -0.16
RtcbQ99LF4 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RtcbQ99LF4 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm14034-201ENSMUST00000120147 551 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm22344-201ENSMUST00000122642 278 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm24078-201ENSMUST00000158184 103 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm3329-201ENSMUST00000159873 556 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Ighv5-8-202ENSMUST00000191967 337 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Gm18001-201ENSMUST00000212023 688 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 AC154435.1-201ENSMUST00000223938 959 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 AC154759.1-201ENSMUST00000224137 1159 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 AC159002.1-201ENSMUST00000226714 924 ntBASIC14.02□□□□□ -0.17
RtcbQ99LF4 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RtcbQ99LF4 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm38192-201ENSMUST00000194364 1847 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm15707-201ENSMUST00000118804 996 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm12986-201ENSMUST00000119037 967 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm26313-201ENSMUST00000157770 308 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 Ly6i-202ENSMUST00000166694 620 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 n-R5s130-201ENSMUST00000178128 119 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm24312-201ENSMUST00000178677 119 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 n-R5s106-201ENSMUST00000179060 119 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 n-R5s118-201ENSMUST00000179887 119 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm7104-201ENSMUST00000179741 2532 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Gm44913-201ENSMUST00000208060 2990 ntBASIC14.01□□□□□ -0.17
RtcbQ99LF4 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
RtcbQ99LF4 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
RtcbQ99LF4 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RtcbQ99LF4 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RtcbQ99LF4 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RtcbQ99LF4 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
RtcbQ99LF4 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RtcbQ99LF4 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC14□□□□□ -0.17
RtcbQ99LF4 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC14□□□□□ -0.17
RtcbQ99LF4 Mir744-201ENSMUST00000103261 100 ntBASIC14□□□□□ -0.17
RtcbQ99LF4 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
RtcbQ99LF4 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC14□□□□□ -0.17
RtcbQ99LF4 Gm16048-201ENSMUST00000134250 663 ntTSL 3 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms