Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Gm45597-201ENSMUST00000211524 1994 ntBASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Itih3-205ENSMUST00000227995 2100 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Zkscan6-201ENSMUST00000018491 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 AC122273.1-201ENSMUST00000213634 2327 ntBASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ccdc28bQ8CEG5 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Gm33366-201ENSMUST00000195583 3827 ntBASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Gm42450-201ENSMUST00000199286 2644 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 AC160929.1-201ENSMUST00000221247 415 ntBASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 AC165148.1-201ENSMUST00000224795 2372 ntBASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ccdc28bQ8CEG5 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Sema4g-201ENSMUST00000026225 4548 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm23931-201ENSMUST00000103842 109 ntBASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm12129-201ENSMUST00000120104 1147 ntBASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm26956-201ENSMUST00000182176 986 ntBASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ccdc28bQ8CEG5 Gm18539-201ENSMUST00000204745 1090 ntBASIC11.21□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms