Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm23596-201ENSMUST00000104304 132 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm12196-201ENSMUST00000120954 262 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm6114-201ENSMUST00000182472 968 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 D9Wsu149-201ENSMUST00000214169 594 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm270-201ENSMUST00000223010 976 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm807-202ENSMUST00000224929 408 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Ccl11-201ENSMUST00000000342 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm5455-201ENSMUST00000058710 715 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm42602-201ENSMUST00000200288 3224 ntBASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Ighv4-2-201ENSMUST00000192975 362 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 CT571245.2-201ENSMUST00000218421 305 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 AC154849.4-201ENSMUST00000224868 365 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 AC154849.3-201ENSMUST00000223733 1660 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm37954-201ENSMUST00000195400 2071 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 AC154537.1-201ENSMUST00000226101 1304 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm43127-201ENSMUST00000195890 2789 ntBASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Sh3rf1Q69ZI1 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms