Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 AC149588.2-201ENSMUST00000228182 1859 ntBASIC12.28□□□□□ -0.44
RaraP11416 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Gm14208-201ENSMUST00000119645 678 ntBASIC12.28□□□□□ -0.44
RaraP11416 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Gm18363-201ENSMUST00000221671 730 ntBASIC12.28□□□□□ -0.44
RaraP11416 Gm8385-201ENSMUST00000058999 643 ntBASIC12.28□□□□□ -0.44
RaraP11416 Gm10288-201ENSMUST00000084614 537 ntBASIC12.28□□□□□ -0.44
RaraP11416 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 A530030E21Rik-201ENSMUST00000199551 1310 ntBASIC12.28□□□□□ -0.44
RaraP11416 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
RaraP11416 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC12.28□□□□□ -0.44
RaraP11416 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
RaraP11416 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC12.27□□□□□ -0.44
RaraP11416 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
RaraP11416 Gm45532-201ENSMUST00000210342 3620 ntBASIC12.27□□□□□ -0.44
RaraP11416 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.27□□□□□ -0.45
RaraP11416 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Gm25148-201ENSMUST00000104611 123 ntBASIC12.27□□□□□ -0.45
RaraP11416 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Gm13916-201ENSMUST00000117368 628 ntBASIC12.27□□□□□ -0.45
RaraP11416 Gm8199-201ENSMUST00000121323 823 ntBASIC12.27□□□□□ -0.45
RaraP11416 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.27□□□□□ -0.45
RaraP11416 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC12.27□□□□□ -0.45
RaraP11416 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC12.27□□□□□ -0.45
RaraP11416 Olfml3-204ENSMUST00000169286 874 ntBASIC12.27□□□□□ -0.45
RaraP11416 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RaraP11416 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC12.27□□□□□ -0.45
RaraP11416 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RaraP11416 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Gm43860-201ENSMUST00000201742 2705 ntBASIC12.27□□□□□ -0.45
RaraP11416 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RaraP11416 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Gm43482-201ENSMUST00000202797 1861 ntBASIC12.26□□□□□ -0.45
RaraP11416 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.26□□□□□ -0.45
RaraP11416 Gm15617-201ENSMUST00000118973 771 ntBASIC12.26□□□□□ -0.45
RaraP11416 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
RaraP11416 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.26□□□□□ -0.45
RaraP11416 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms