Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 Gm2639-201ENSMUST00000156881 1297 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 Gm9002-201ENSMUST00000178437 499 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Gm38314-201ENSMUST00000195709 625 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 Gm18893-201ENSMUST00000198416 943 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hmgb3O54879 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Abca17-201ENSMUST00000039324 5202 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Umodl1-201ENSMUST00000066554 5007 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Zkscan1-204ENSMUST00000110963 4670 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Afap1-201ENSMUST00000064571 6618 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Abcg1-201ENSMUST00000024829 3610 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Gm10829-201ENSMUST00000202084 2988 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Rgs8-202ENSMUST00000111810 5614 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Bicd1-203ENSMUST00000111513 4049 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Pik3cg-201ENSMUST00000053215 5871 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm37737-201ENSMUST00000195013 1638 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Cmtr1-201ENSMUST00000024816 6380 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm43818-201ENSMUST00000200605 466 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm44369-201ENSMUST00000204543 2175 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm40466-201ENSMUST00000212174 422 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 AC166359.1-201ENSMUST00000220243 1871 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 AC129931.1-201ENSMUST00000228865 1861 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Vmn1r58-204ENSMUST00000228728 9991 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm38089-201ENSMUST00000193585 1514 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 Snrnp200-201ENSMUST00000103220 6745 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 9530059O14Rik-201ENSMUST00000181107 3978 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Rbm27-201ENSMUST00000046972 6134 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Hmgb3O54879 Gm44573-201ENSMUST00000191753 2370 ntBASIC9.35□□□□□ -0.91
Hmgb3O54879 Lsamp-202ENSMUST00000099761 8794 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hmgb3O54879 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hmgb3O54879 Gm7841-201ENSMUST00000122108 1629 ntBASIC9.34□□□□□ -0.91
Hmgb3O54879 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC9.34□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 170.8 ms