Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 AC154572.1-201ENSMUST00000226098 1204 ntBASIC11.13□□□□□ -0.63
Chd3B1AR17 n-R5s185-201ENSMUST00000083953 119 ntBASIC11.13□□□□□ -0.63
Chd3B1AR17 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC11.13□□□□□ -0.63
Chd3B1AR17 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm43912-201ENSMUST00000204352 538 ntBASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Chd3B1AR17 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.13□□□□□ -0.63
Chd3B1AR17 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Chd3B1AR17 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm12389-201ENSMUST00000117696 418 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm25545-201ENSMUST00000122673 323 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm16030-201ENSMUST00000159098 603 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm4982-201ENSMUST00000160440 1098 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm25072-201ENSMUST00000175233 235 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm19166-201ENSMUST00000196041 1063 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm7902-201ENSMUST00000198842 947 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm25562-201ENSMUST00000104608 133 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
Chd3B1AR17 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm17192-201ENSMUST00000169031 511 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC11.12□□□□□ -0.63
Chd3B1AR17 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Chd3B1AR17 Gm16380-201ENSMUST00000077997 478 ntBASIC11.12□□□□□ -0.63
Chd3B1AR17 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Chd3B1AR17 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC11.11□□□□□ -0.63
Chd3B1AR17 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Chd3B1AR17 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Chd3B1AR17 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Chd3B1AR17 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Chd3B1AR17 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Chd3B1AR17 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms