Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Scn11aQ9R053 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC24.59■■□□□ 1.53
Scn11aQ9R053 Gm6085-201ENSMUST00000182774 1470 ntBASIC24.59■■□□□ 1.53
Scn11aQ9R053 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC24.59■■□□□ 1.53
Scn11aQ9R053 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Scn11aQ9R053 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn11aQ9R053 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Gm8493-201ENSMUST00000196881 489 ntBASIC24.57■■□□□ 1.52
Scn11aQ9R053 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Scn11aQ9R053 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Scn11aQ9R053 Gm37179-201ENSMUST00000194862 823 ntBASIC24.55■■□□□ 1.52
Scn11aQ9R053 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Scn11aQ9R053 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Scn11aQ9R053 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC24.54■■□□□ 1.52
Scn11aQ9R053 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Gm27405-201ENSMUST00000184201 112 ntBASIC24.53■■□□□ 1.52
Scn11aQ9R053 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC24.53■■□□□ 1.52
Scn11aQ9R053 Gm27045-201ENSMUST00000182145 1402 ntBASIC24.53■■□□□ 1.52
Scn11aQ9R053 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Scn11aQ9R053 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Gm10209-201ENSMUST00000203397 1607 ntBASIC24.51■■□□□ 1.51
Scn11aQ9R053 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Scn11aQ9R053 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Scn11aQ9R053 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Scn11aQ9R053 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC24.5■■□□□ 1.51
Scn11aQ9R053 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
Scn11aQ9R053 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Scn11aQ9R053 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Scn11aQ9R053 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC24.5■■□□□ 1.51
Scn11aQ9R053 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Scn11aQ9R053 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
Scn11aQ9R053 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Scn11aQ9R053 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC24.48■■□□□ 1.51
Scn11aQ9R053 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Scn11aQ9R053 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Scn11aQ9R053 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Scn11aQ9R053 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Scn11aQ9R053 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms