Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdc40Q9DC48 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.79■□□□□ 0.6
Cdc40Q9DC48 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Cdc40Q9DC48 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.77■□□□□ 0.6
Cdc40Q9DC48 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Cdc40Q9DC48 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.77■□□□□ 0.6
Cdc40Q9DC48 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdc40Q9DC48 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.77■□□□□ 0.6
Cdc40Q9DC48 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdc40Q9DC48 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cdc40Q9DC48 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cdc40Q9DC48 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdc40Q9DC48 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdc40Q9DC48 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdc40Q9DC48 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdc40Q9DC48 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Golgb1-201ENSMUST00000023534 498 ntBASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cdc40Q9DC48 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Cdc40Q9DC48 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Gm12821-201ENSMUST00000120022 600 ntBASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.73■□□□□ 0.59
Cdc40Q9DC48 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdc40Q9DC48 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdc40Q9DC48 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Cdc40Q9DC48 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Cdc40Q9DC48 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC18.72■□□□□ 0.59
Cdc40Q9DC48 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cdc40Q9DC48 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdc40Q9DC48 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdc40Q9DC48 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms