Protein–RNA interactions for Protein: Q9CRC8

Lrrc40, Leucine-rich repeat-containing protein 40, mousemouse

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrrc40Q9CRC8 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Lrrc40Q9CRC8 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lrrc40Q9CRC8 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.2■□□□□ 0.82
Lrrc40Q9CRC8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lrrc40Q9CRC8 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Gm7143-201ENSMUST00000222811 859 ntBASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lrrc40Q9CRC8 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lrrc40Q9CRC8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Lrrc40Q9CRC8 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lrrc40Q9CRC8 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lrrc40Q9CRC8 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Lrrc40Q9CRC8 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lrrc40Q9CRC8 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Lrrc40Q9CRC8 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Lrrc40Q9CRC8 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Lrrc40Q9CRC8 Gm15820-201ENSMUST00000201566 728 ntBASIC20.14■□□□□ 0.81
Lrrc40Q9CRC8 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Lrrc40Q9CRC8 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lrrc40Q9CRC8 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lrrc40Q9CRC8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Gm5812-201ENSMUST00000061073 957 ntBASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lrrc40Q9CRC8 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lrrc40Q9CRC8 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Lrrc40Q9CRC8 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.12■□□□□ 0.81
Lrrc40Q9CRC8 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lrrc40Q9CRC8 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms