Protein–RNA interactions for Protein: Q8BUM9

Usp43, Ubiquitin carboxyl-terminal hydrolase 43, mousemouse

Predictions only

Length 1,132 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp43Q8BUM9 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp43Q8BUM9 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp43Q8BUM9 Gm9870-201ENSMUST00000063874 645 ntBASIC20.65■□□□□ 0.9
Usp43Q8BUM9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp43Q8BUM9 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Usp43Q8BUM9 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Usp43Q8BUM9 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.64■□□□□ 0.89
Usp43Q8BUM9 Gm22238-201ENSMUST00000175222 88 ntBASIC20.64■□□□□ 0.89
Usp43Q8BUM9 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.64■□□□□ 0.89
Usp43Q8BUM9 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp43Q8BUM9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp43Q8BUM9 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp43Q8BUM9 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp43Q8BUM9 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Usp43Q8BUM9 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.63■□□□□ 0.89
Usp43Q8BUM9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp43Q8BUM9 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp43Q8BUM9 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp43Q8BUM9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp43Q8BUM9 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.61■□□□□ 0.89
Usp43Q8BUM9 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp43Q8BUM9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp43Q8BUM9 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp43Q8BUM9 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp43Q8BUM9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Usp43Q8BUM9 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.6■□□□□ 0.89
Usp43Q8BUM9 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp43Q8BUM9 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp43Q8BUM9 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.59■□□□□ 0.89
Usp43Q8BUM9 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp43Q8BUM9 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp43Q8BUM9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp43Q8BUM9 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp43Q8BUM9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Usp43Q8BUM9 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC20.58■□□□□ 0.89
Usp43Q8BUM9 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Usp43Q8BUM9 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp43Q8BUM9 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
Usp43Q8BUM9 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp43Q8BUM9 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.58■□□□□ 0.88
Usp43Q8BUM9 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp43Q8BUM9 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp43Q8BUM9 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp43Q8BUM9 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp43Q8BUM9 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms