Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Atg4bQ8BGE6 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Atg4bQ8BGE6 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Atg4bQ8BGE6 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Atg4bQ8BGE6 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Atg4bQ8BGE6 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Atg4bQ8BGE6 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
Atg4bQ8BGE6 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Atg4bQ8BGE6 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.12■□□□□ 0.65
Atg4bQ8BGE6 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Atg4bQ8BGE6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Atg4bQ8BGE6 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Atg4bQ8BGE6 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Atg4bQ8BGE6 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.65
Atg4bQ8BGE6 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Atg4bQ8BGE6 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.08■□□□□ 0.65
Atg4bQ8BGE6 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Atg4bQ8BGE6 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Atg4bQ8BGE6 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Atg4bQ8BGE6 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms