Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Trim56Q80VI1 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trim56Q80VI1 AC166356.1-201ENSMUST00000228236 1426 ntBASIC24.11■■□□□ 1.45
Trim56Q80VI1 Snhg20-203ENSMUST00000182811 2153 ntBASIC24.11■■□□□ 1.45
Trim56Q80VI1 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Gm8770-201ENSMUST00000121113 1109 ntBASIC24.11■■□□□ 1.45
Trim56Q80VI1 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trim56Q80VI1 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
Trim56Q80VI1 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC24.1■■□□□ 1.45
Trim56Q80VI1 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim56Q80VI1 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
Trim56Q80VI1 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim56Q80VI1 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC24.09■■□□□ 1.45
Trim56Q80VI1 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
Trim56Q80VI1 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
Trim56Q80VI1 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Trim56Q80VI1 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
Trim56Q80VI1 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
Trim56Q80VI1 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC24.08■■□□□ 1.45
Trim56Q80VI1 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Trim56Q80VI1 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
Trim56Q80VI1 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC24.08■■□□□ 1.44
Trim56Q80VI1 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
Trim56Q80VI1 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
Trim56Q80VI1 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Gm38160-201ENSMUST00000193090 2499 ntBASIC24.07■■□□□ 1.44
Trim56Q80VI1 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim56Q80VI1 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Trim56Q80VI1 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim56Q80VI1 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim56Q80VI1 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC24.04■■□□□ 1.44
Trim56Q80VI1 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim56Q80VI1 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim56Q80VI1 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Trim56Q80VI1 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim56Q80VI1 Gm27454-201ENSMUST00000185090 204 ntBASIC24.02■■□□□ 1.44
Trim56Q80VI1 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC24.02■■□□□ 1.44
Trim56Q80VI1 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim56Q80VI1 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
Trim56Q80VI1 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim56Q80VI1 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim56Q80VI1 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim56Q80VI1 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms