Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Smarca1Q6PGB8 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Smarca1Q6PGB8 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Smarca1Q6PGB8 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Smarca1Q6PGB8 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC22.64■■□□□ 1.21
Smarca1Q6PGB8 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC22.64■■□□□ 1.21
Smarca1Q6PGB8 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Smarca1Q6PGB8 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC22.64■■□□□ 1.21
Smarca1Q6PGB8 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
Smarca1Q6PGB8 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Smarca1Q6PGB8 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Smarca1Q6PGB8 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
Smarca1Q6PGB8 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Gm21956-201ENSMUST00000179946 522 ntBASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Golgb1-201ENSMUST00000023534 498 ntBASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Smarca1Q6PGB8 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
Smarca1Q6PGB8 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Smarca1Q6PGB8 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Smarca1Q6PGB8 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
Smarca1Q6PGB8 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Gm9870-201ENSMUST00000063874 645 ntBASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Smarca1Q6PGB8 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC22.54■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms